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Hello 🤖 My name is Jacob! I'm a bioinformatics scientist working in drug discovery at BMS.

I'm passionate about bioinformatics, open-source software development, digital image processing, and ML/DL.

Media and Writing

Projects

  • @VesselVio, an open-source application for vasculature dataset analysis and visualization
  • Creating ML/DL/stats educational content @learning-repo.
    • This repo hosts all of the manim and Python code I use to create materials for my Breaking it Down articles.

Jacob Bumgarner's Projects

daily_mini_analysis icon daily_mini_analysis

A short python script written to scrape iOS text messages for crossword solve times.

deeplabcut icon deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

minimally icon minimally

Minimally is a Jekyll theme for GitHub Pages

old_site icon old_site

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

pyvista icon pyvista

3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)

r_education icon r_education

My formal exploration of R to prepare for future work.

rosagpt icon rosagpt

RosaGPT is a working and learning assistant for bioinformatics and biostatistics topics.

vesselvio icon vesselvio

An open-source application for the analysis and visualization of segmented vasculature datasets

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