aakrosh Goto Github PK
Name: Aakrosh Ratan
Type: User
Company: University of Virginia
Name: Aakrosh Ratan
Type: User
Company: University of Virginia
ASCAT copy number R package
Report on a BAM file
Bioinformatics data-mining
Scripts and pipelines for internal use
Characterization of Germline variants
Call CNVs based on read-depth signal.
An ongoing repository of data on coronavirus cases and deaths in the U.S.
CrossMap is a python program to lift over genome coordinates from one genome version to another.
Assign sequences to reference genomes in a database
Configuration files for a fresh installation
Visualize read depth from a GATK vcf file
Galaxy wrappers for the Genome Diversity set of tools from Bedoya-Reina et al., (2013) Galaxy tools to study genome diversity. GigaScience 2:17
Population-scale genotyping using pangenome graphs
Fast HLA type inference from whole-genome data
Tools to assist with k-mer analyses.
Program for aligning DNA sequences, a pairwise aligner.
Analyze the patterns of linkage disequilibrium
Author your academic documents in markdown
Draw linear plot to show variants.
MSigDB gene sets for multiple organisms in a tidy data format
MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via a multi-resolution perspective.
Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of assembly and polishing
Scripts to download genomes from the NCBI FTP servers
R Package for Non Invasive Prenatal Testing (NIPT) analysis
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
Simple pipeline to run QuasiRecomb on fastq files
The HTML Presentation Framework
Website for "Introduction to RNA-Seq analysis, Fall 2024" at https://aakrosh.github.io/rna_seq_lesson/
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.