amcpherson Goto Github PK
Name: Andrew McPherson
Type: User
Company: @shahcompbio
Bio: Computational Oncologist
Location: New York
Name: Andrew McPherson
Type: User
Company: @shahcompbio
Bio: Computational Oncologist
Location: New York
Personal pages
C++ API & command-line toolkit for working with BAM data
Tools for early stage alignment file processing
Conda recipes for the bioconda channel.
Blossom V python wrapper
Battenberg algorithm and associated implementation script
Clonality inference in multiple tumor samples using phylogeny
An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Accurate Rearrangement Detection using Breakpoint Specific Realignment
Whole Genome Simulator for Next-Generation Sequencing
Vector representations of gene co-expression in single cell RNAseq.
Genotype and phase snps workflow
R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
Markdown <=> IPython Notebook
Annotates variants in MAF with OncoKB annotation.
Open OnDemand Apps
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
Application for inferring subclonal composition and evolution from whole-genome sequencing data.
python bam reader
A tutorial on the basics of the pyro probabilistic programming language
Clone-specific genomic structure estimation in cancer
Single-cell copy number calling and event history reconstruction.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.