Comments (1)
Could you tell me the results of running class(strata)
? The error message is saying the type of strata
is glue
, which is a type for string interpolation, certainly not a tree. I think something is going wrong earlier in the pipeline.
Could you maybe post the pipeline you are running here? If you don't mind sharing it, you can just paste it into the comments. Alternatively, you can DM me a text file with the code.
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Related Issues (20)
- Issues in compiling results
- Empty faa file for 1008392 produces error with diamond HOT 2
- strata_blast issue HOT 18
- [Question]NCBI nr database VS uniprot HOT 1
- BLAST Database error HOT 3
- qseqid problem HOT 8
- Error: 'classification' is not an exported object from 'namespace:taxizedb' HOT 1
- No alias or index file found
- Duplicated factor levels while calling stratify()
- strata_blast issue, similar to #15
- Error when importing external blast results
- May I use Phylostratr to study the genomic phylostratigraphy of Mycobacterium tuberculosis?
- Error in readLines(con) : HTTP error 400. HOT 14
- Help!!!! HTTP 400 HOT 1
- Error in (function (fastafile, blastdb = "blastdb", verbose = FALSE) : Failed to make blast database blastdb/Araport11_genes.201606.pep.fasta In addition: Warning message: In system2("makeblastdb", stderr = TRUE, stdout = TRUE, args = c("-dbtype", : running command '"makeblastdb" -dbtype prot -in Araport11_genes.201606.pep.fasta -out blastdb/Araport11_genes.201606.pep.fasta' had status 1 HOT 10
- Error: The focal species is not present in UniProt HOT 3
- "ncbi_tree" function error: Error in x$id : $ operator is invalid for atomic vectors HOT 1
- Error in `sql_integer_list(x)` when trying `strata_convert()` HOT 1
- Issue with strata_uniprot_pfam_map- no applicable method for 'mutate'
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