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Name: Anurag Daware
Type: User
Name: Anurag Daware
Type: User
Simple codes and lines to process 3C/Hi-C data
Lift same species genome co-ordinates from one assembly to another
Coordinate conversion of Axiom SNP array markers using BLAST
Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
minimal example implementations for bioinformatics workflow managers
Helper scripts for working with Bionano data
BioNanoAnalyst is a tool providing GUI to assess the genome assembly quality using BioNano data.
Best Linear Unbiased Prediction (BLUP) calculations on multi-year and multi-location phenotype data
Deep learning framework for SV calling and genotyping
Diploid genome assembly analysis tools
A collection of useful Docker builds
The script takes multi-year, multi-replication enviorment data as input and does exploratory analyisis (histogram, box plot), calculates baisc statistcs (mean, SD, missingness) and perform imputation (save imputed phenotype)
A box of genomics tools
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
The repository for codes developed to generated the Maize NC358 assemblies and analyses.
Live (Github-flavored) Markdown Editor
Analyze a set of genomes with the anvi'o pangenome pipeline
Omni-C data processing documentation and scripts
Open courseware for workshops in applied bioinformatics
Annotation pipeline for plant genomes by PGSB
Scripts
Our laboratory repository
a python pipeline to generate chain files between different genome assemblies for LiftOver.
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
Scripts and one-liners to do data formatting and simple tasks required by fellow biologists.
Reads to variants workflow involving fastp-BWA-GATK
VGP repository for the genome assembly working group
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.