Comments (3)
Hello,
Would you be able to post a couple of lines of your draft assembly fasta file and your barcoded reads fastq? Often, an empty graph file is due to issues with formatting. Also, take a look at the documentation here: ftp://ftp.bcgsc.ca/supplementary/ARCS/docs/ - there are instructions for running ARCS there that may also help.
Lauren
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Thanks. I will check.
from arcs.
@tiramisutes - I'm assuming you were able to get ARCS running properly -- feel free to re-open if you have further problems.
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Related Issues (20)
- About Running ARCS in default mode HOT 3
- GCC version update HOT 1
- arcs-1.2.2: abyss-fixmate-ssq sometimes segfaults HOT 9
- Short read length question: can the tool accept 250? HOT 2
- arcs-long: tiny PE-pairs are produced HOT 3
- Scaffolding Expectations HOT 12
- Running ARCS and ARKS HOT 2
- Parameters for corrected ONT reads HOT 2
- arcs-make in bin HOT 2
- Add optional dependency of pigz HOT 1
- unrecognized option '--fastq' HOT 3
- fastq formatting barcodes in BX tag HOT 8
- ARKS fails to create any links with a highly repetitive input HOT 4
- Parameters for PacBio HiFi data HOT 3
- Can this software use HiC data, or need to use the sequencing technology mentioned in your paper? HOT 1
- `arcs-tigmint` and `arks-tigmint` struggle with input files outside working directory HOT 3
- Incorrect program call? HOT 6
- `arcs-long`/`arks-long` vs `LINKS`? HOT 2
- Understanding specific scaffolding output HOT 4
- tigmint-make 'missing separator' error HOT 8
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