Ben Pedigo's Projects
Tools for training and applying an apical classifier on skeleton data from the chunkedgraph
Affine and Regularized DEformative Numeric Transform (ardent) is a Python package for performing image registration using LDDMM.
Tools used in identifying the axons and dendrites of neurons
Readme for my profile
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
This is the repo for the neurodata blog
Tools for cortical connectome analyses
Mapping packages and services in the CAVE ecosystem
Minimal working example for cloud workflow using CAVE, Amazon SQS, Google Cloud Storage, etc.
A tool for creating skeleton python projects
my curriculum vitae
stashing drosophila MB work
Tools for analyzing the quality of EM image alignments
An easy to use blogging platform, with enhanced support for Jupyter Notebooks.
A random collection of tools I find useful for data science.
Make your first open-source contribution.
Stashing graph libraries I come across (mostly just Python ones)
graspologic-native is a library of rust components to add additional capability to graspologic (https://github.com/microsoft/graspologic), a python library for intelligently building networks and network embeddings, and for analyzing connected data.
Python package for graph statistics
Publication-ready visualization of overlays of imagery and segmentation from cloudvolume data
JHU Dissertation LaTeX mwe
Analyzing the results of the 2024 "Best Croissant in Seattle" tournament from the Allen Institute Electron Microscopy Connectomics team
Short scripts and functions for reading in binary meshes, downsampling if necessary, and exporting as .stl