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Interpretation and visualization of microbiome charts

aghmatrix

An R package to compute relationship matrices for diploid and autotetraploid species

alignment-from-vcf

Make fasta alignments from vcf files

beautiful-visualization-with-python

python数据可视化之美

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

bertin-map

A package to draw maps in javascript

bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

bioinformatics-100-days

Learn and practice the bioinformatics skills in 100 Days.

c9-python-getting-started

Sample code for Channel 9 Python for Beginners course

cactus

Official home of genome aligner based upon notion of Cactus graphs

flo

Same species annotation lift over pipeline.

gwas_dhs_landraces

R-Scripts for haplotype detection in landraces

gwas_proj

GWAS

gwas_scripts

Codebook from my GWAS cookbook

homolcontigsbyannotation

python script to identify genes that are present on multiple contigs

hpc

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

kounta-kmer

🧮 🔢 Generate multi-sample k-mer count matrix from WGS

leafletslider

LeafletSlider

lettuce2020

Codes for the lettuce resequencing project in 2020

ngenomesyn

Any Way to Show Multi genomic Synteny

ngs-tools

Scripts for next generation sequencing

phaser

phasing and Allele Specific Expression from RNA-seq

pong-admixture

Fast analysis and visualization of latent clusters in population genetic data

poplarslr

Codes for the paper on Poplar SLR genes

r_for_biologists

Scripts and data for Plotting in R for Biologists, a video course on YouTube

rna-seq-snakemake

Automated RNA-seq analysis pipeline using Snakemake

rnaseq-gatk

GATK RNA-Seq Variant Calling in Nextflow

rnaseq_gatk_jgw

Variant calling from RNA-seq data using the GATK joint genotyping workflow

scanpav

Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.