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lucacozzuto avatar lucacozzuto commented on August 31, 2024 1

Hi, the original idea was to generate an index based on the annotation, align the reads and discover new splicing sites. They will be then used to generate another (improved) index. Finally you'll use this index for aligning the reads. I think is ok to change the code since now everything can be done in a single step.

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pditommaso avatar pditommaso commented on August 31, 2024

I leave this to @lucacozzuto

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kojix2 avatar kojix2 commented on August 31, 2024

Thanks!

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