Name: Crhistian Cardona
Type: User
Company: Tübingen University
Bio: Ph.D. Researcher, ML and Computational Epigenomics
IMPRS-IS, Cyber Valley, Tübingen University | Dundee University
Twitter: crhistocardona
Location: Tübingen, Germany
Crhistian Cardona's Projects
Biobase repository: https://github.com/Bioconductor/Biobase with support for sparse matrix
Deconvolution of CRC in organoid and fibroblast bulk data identifying epithelial cell types proportions
Github pages
DecoFlex deconvolution method for Omic data implemented as DecoFlexR
Decomposition of heterogeneous DNA methylomes
Multi-subject Single Cell Deconvolution
Implementation of the Non-negative Multiple Matrix Factorization (NMMF) algorithm proposed in Takeuchi et al, 2013 with some modifications. There is a python native version NMMFlexPy and a R wrapper NMMFlexR
SCDC project, originally on: https://github.com/meichendong/SCDC. Support sparse matrix among other additions.
R Notebook with scripts for running the deconvolution of thymus bulk data identifying T-cell proportions
Project xbioc originally on: https://github.com/renozao/xbioc with support for sparse matrix