Comments (5)
Hmm, indeed, I think this may be related to citr
. If I understand correctly, you want to load the references in paper_2020.bib
rather than in Zotero, right?
It seems the addin does not correctly identify the bibliography file in the YAML front matter. Could you try installing citr
from this GitHub repository (remotes::install_github("crsh/citr")
) to see if that helps? If it doesn't could you provide the R Markdown and Bib-file?
from citr.
Hi,
Thanks for getting back to me. I don't actually mind where the references go, I just thought it was standard practice to have a bibliography file in the same folder as the rmd. I installed citr as you suggested, still no good, it comes up with an error message: Error: bib_file is not a character vector
I can load the zotero connection and synch library like that, but then it doesn't reference correctly. This is the first paper I'm writing in markdown so I'd like to get it right from the start.
below is the copy of the rmd, I"m not sure how to add the bib-file? It says it isn't supported.
Thanks so much for your help!
---
title: "testing reference"
author: "Gabriella"
date: "08/07/2020"
output: html_document
pdf_document: default
html_document: default
title : "Referencing
citation_package: citr
bibliography: bibliography_HEB.bib
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```
```{r packages, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
#Installing the referencing package
remotes::install_github("crsh/citr")
```
Just typing to try and reference. Lets try reference Wu et al 2013 `
from citr.
Sorry for the late response. If you are still interested in debugging this, could you try and remove the white space prior to the bibliography field in the YAML front matter:
bibliography: bibliography_HEB.bib
rather than
bibliography: bibliography_HEB.bib
Also, remove this line:
citation_package: citr
citr
only handles the insertion of the citation keys (e.g., [@author_year]
) into the R Markdown document. citation_package
controls, which software is used to render the citations when you knit the document (e.g., BibLaTeX or pandoc-citeproc
). Unless you have a "nonstandard" usecase, you should be fine just relying on the default.
from citr.
Hello, I have been having the same problem as GabriellaS-K when trying to use the RStudio citr Addin: it says bibliography files not found, and shows a blank space after "Bibliography files found in the YAML header". The odd thing is that it sometimes does work, and sometimes doesn't (sometimes within a single R session) and I have no idea why this might be happening. A few extra notes:
- the citr package installed is completely up to date
- No blank spaces in the YAML header, here's my code:
bibliography : ["biblio.bib"]
- No problems with creating the bibliography section while knitting. Citations that had already been referenced using the Addin do appear in the knitted references section.
When I re-start an R session, the first time I try to cite, I get the message above that GabriellaS-K posted. The next time I try to do it, I get an error message in the R console:
Error: bib_file is not a character vector
Any clues as to what could be going wrong, or how to fix this?
from citr.
I was having the same issue with my Rmarkdown. Error: bib_file is not a character vector. By removing the white space as commented above and restarting RStudio I was able to get citr package to work.
from citr.
Related Issues (20)
- Citr Aborts session when accessing library HOT 9
- RStudio 1.4 to provide Zotero integration HOT 1
- citr crashes connecting to Zotero library HOT 11
- citr currently not available from CRAN HOT 13
- Error in callFun: argument "location" is missing HOT 4
- Allow for different types of citation key formats in tidy_bib_file() HOT 3
- Allow bibtype "Document" to be read by citr HOT 3
- Citr is not allowed to install in R ver. 4.0.2, Please update! HOT 2
- requires RStudio 0.99.796 or newer (your version is 1.3.1093) HOT 4
- later: interrupt occurred while executing callback. HOT 1
- Error loading Bibtex for second citation insert, citr crashes after inserting one citation
- Add ability for `tidy_bib_file()` to scan `_bookdown.yml` HOT 1
- Error when 2 citations have same author (without parenthesis)
- Error when using the addin: condition length > 1
- How do you implement server-side selectize? HOT 1
- Specific `knitr` and `citr` failure with out.width option
- Error in data.frame: arguments imply differing number of rows HOT 2
- Exporting bib file can successfully be useful and insert citation is ok, but once clicking "Connect and load libraries", it crashed. HOT 4
- The name list field author cannot be parsed HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from citr.