Comments (3)
ha -- can't reproduce while trying "manually". May be it was a different environment in which the pytest was running it. will double check. BUT interestingly
io = NWBHDF5IO("~/Downloads/sub-anm324650_ses-20160422_behavior+icephys+ogen.nwb", mode='r', load_namespaces=True)
doesn't work due to not expanding ~
! So the
import os.path as op
io = NWBHDF5IO(op.expanduser("~/Downloads/sub-anm324650_ses-20160422_behavior+icephys+ogen.nwb"), mode='r', load_namespaces=True)
works ... I will send a PR for that
from example-notebooks.
what is your environment? Are you in Allen-SDK?
from example-notebooks.
no... that was in the base
. I guess indeed for this one to succeed I should have chosen another conda env. heh -- complicates providing automated solution for #10 ;)
Also strangely it succeeded later when I tried again -- I guess one of the notebooks does install allen-sdk via some pip install
command it contains... uff. Anyways -- I will send a PR for the expanduser
to close this issue
from example-notebooks.
Related Issues (12)
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from example-notebooks.