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Scripts to pull data from PUBMED and generate statistics for the Emory ADRC
This is a development workspace for a pathology viewer for the ADRC @ Emory using the DSA CodeBase
This is the computable brain DHTML version
Application for hosting challenges
Contains all examples of our "Interactive & Dynamic Force-Directed Graphs with D3" blog post
A collection of utilitites to tile and thumb NDPI files, a proprietary file format from Hamamatsu
This is a set of tools I am using in openslide to tile images into squares at a given magnification, original C implementation also included
Various XNAT perl/bash scripts I have written to interact with XNAT client
This is an open source version of the Cancer Digital Slide Archive (CDSA); a whole slide viewing application
Patch for DinoV2 training code to support PyTorch 2.4
Uses docker compose with a python flask microservice and MongoDB instance to make a sample application
Install and set up Docker
These are lightweight Jupyter notebook and/or dash examples pulling and generating annotations in a DSA friendly format
Prototypes for Content Based Image Retrieval using Deep Learning and Girder as the data store
Faceted Search using Webix, MongoDB to provide simple search UI
This app will scan an image from a digital slide, upload the slide to a REDCap instance, and then try and do OCR
Digital Slide Archive App for TCGA data using the WEBIX UI
Scripts and small apps developed to interact with the Digital Slide Archive
Creating place for simple DSA helper functions and notebooks
Serves large image files as DZI files, with some other functionality for image QC
Working on a prototype where I use PostGIS as the backend to storage annotation data for images in the Digital Slide Archive
This is a front end and back end system to generate superpixels for large image data and then build a tool to use superpixel based annotation
Cleaned up codeset used in Fibrosis Quantification project.
Containerized service that should run OCR on an image so I can integrate with the DSA
These are various scripts generated by me and colleagues for managing XNAT, cleaning up data, brain tumor segmentatino ,etc
Creating Docker build scripts for various projects in my lab
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.