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fodis's Introduction

Fodis is continously updated, but the beta version is intended for brave users only and is not fully documented Fodis 1.X.

If you prefer the reliable version, you are in the right page. If you are a Matlab user, run the source code. If you aren't, you'll see the instructions in Fodis for WIN MAC LINUX.

*linux stand alone version available only for version 1.2 (no membrane analysis).

About Fodis

Fodis is a desktop application to visualise and analyze Force Spectroscopy curves of the unfolding of Single Molecules.

License

Fodis is licensed under Apache License 2.0.

If you use it, please cite it:

N. Galvanetto, et al. Fodis: Software for Protein Unfolding Analysis, Biophysical Journal. 114 (2018) 1264–1266. doi:10.1016/j.bpj.2018.02.004.

Supported File Formats

-txt (exrtacted from JPK)

-jpk-force

-txt (exrtacted from Bruker)

-txt (free format)

Note: the tool is still evolving

Getting Fodis

Installation Requirements

The system requirements can be consulted here https://it.mathworks.com/support/sysreq/previous_releases.html for version r2016b

Some features examples

(to download the unreleased code https://github.com/nicolagalvanetto/Fodis/archive/master.zip)

fodis's People

Contributors

galvanetto avatar

Stargazers

Saurabh Vikas Talele avatar avatar avatar Gage Leighton avatar Dafu Wang avatar Andrea Perissinotto avatar

Watchers

Andrea Perissinotto avatar avatar

Forkers

andachten

fodis's Issues

Manual deflection sensitivity input

Hi,
How can I put a manual deflection sensitivity value in a particular force curve? I have tried to change the sensitivity value using the "pre-processing shift" option but no change in the result. when I import the trace the deflection sensitivity was 36nm/V but in FODIS it shows 12.88nm/V.
Please Help

Need help

Respected Sir/Madam
I am trying to fit the WLC model in a force-distance curve (. txt format) but the fitting is not completed. please guide me on how do I fit the model. If possible please tell me a step-by-step protocol.
Regards
Debashish

Export fit pc, F, and Lc

Hi Nicola,

I have recently downloaded Fodis for single molecule afm analysis (non-Matlab version). Is there a way to export the variable fit Pc, Lc, and F for each curve?

Thanks!

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