Comments (1)
Please remember that based on the classifier, the final_table.tsv
file can be found in different levels inside the 7.mainOutput
folder.
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Related Issues (20)
- add remove_singletons option in OTU pipeline HOT 4
- Error when unzipping using a checkpoing HOT 1
- HPC job specifications HOT 4
- custom_ref_db doesn't work. HOT 5
- Upgrade to crest4
- provide pema main data product in a 7-level taxonomy format HOT 3
- PEMA Ro-Crate HOT 1
- PEMA to create a run summary file HOT 2
- MIDORI updates HOT 2
- Unexpected Singletons in Final Table despite removeSingletons set to "Yes" HOT 5
- Error PEMA ASV inference: Directory swarm does not exists HOT 5
- 16s copy number
- When Swarm is chosen for the ITS, the names of the sequences are OtuXX and not ASVXX HOT 4
- Needed updates on "PEMA's output files.md" HOT 2
- time consuming preprocessing
- Storage usage of PEMA HOT 1
- pandaseq error "Something is wrong with this ID" HOT 17
- Long recurrent taxonomic labels HOT 1
- Wrong sample names in OutputPerSample HOT 5
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