Comments (3)
I would not see a specific reason to keep it in the try except clause. pypesto.petab has to be imported separately and at this stage I think we can expect people to have installed petab. What do you think @dweindl, @Doresic?
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Yeah, think it can be moved outside.
A thought: I remember I had to do this for my ordinal/semiquantitative stuff even though they should only ever be used with those two included. If I didn't do it, some tests that do not install petab/amici would fail. However, I was always surprised by how and why these tests would import those modules then. Back then I didn't understand it much / think twice. But there might be something weird there.
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closed in #1355
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Related Issues (20)
- Handling of simulation failures in AmiciPredictor
- Frequent timeouts of RTD builds HOT 3
- Waterfall plot error: `order_by_id` and `start_indices` do not work together
- Optimization with conditions specific for observables fails HOT 4
- Frequent timeouts for `mac (3.11)` workflow runs HOT 3
- Check pypesto/sample/geweke_test.py calculate_zscore/spectrum0/spectrum
- Frequent readthedocs timeout HOT 1
- `pyjulia` is no longer maintained
- Roadrunner petab test case 0018 fails on Mac HOT 3
- Lazy loading of optimization results from HDF5
- Aggregated Objective does not return expected outputs using `return_dict` HOT 7
- NegLogParameterPriors evaluates prior density also on fixed parameters HOT 6
- AmiciObjective: For sensi_orders>0, check that sensitivities wrt all relevant parameters are computed
- PetabImporter does not respect estimate=0 HOT 3
- KeyError for parameter with amici prefix HOT 2
- Lots of warnings in test suite HOT 2
- Using PyPesto with jax HOT 11
- Roadrunner does not correctly handle estimated noise parameters
- objective.FD does not inherit the PrePostProcessor
- How to set `fill_fixed_parameters`=True for petab parameter mappings?
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