Judith Ballesteros's Projects
Conda recipes for the bioconda channel.
The Poseidon Community Archive (PCA)
This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis, with a particular emphasis on population genetics.
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
A computational algorithm for delivering multiple global alignment results originated from local alignments.
My personal repository.
website
Repository to host tool-specific module files for the Nextflow DSL2 community!
Pipeline to annotate frequencies of SNPs in gnomAD v3
A pipeline to get the ancestral annotations variants.
Pipeline to filter and merge ancestral vcfs from different samples.
Test data to be used for automated testing with the nf-core pipelines
Pipeline to prepare dbSNP VCF and tsv coverage grom gnomAD for analysis.
A pipeline to join and tag beds from different files.
Code for counting and giving positions of MRE snps.
Pipeline that takes a pop vcf, runs and plot TreeMix
Repository for TallerdeReproducibilidad
Ram's Tesis
Filter vcfs
Nextflow pipeline (DSL2) that runs fstatistics with AdmixTools, taking different input types (VCF, PLINK, EIGENSTRAT).
Repository with pipelines for running selection statistics and fully annotate signals.
A pipeline that makes Parallel Coordinate Plot from VCF.