Jared Galloway's Projects
This is a simple paint application programmed in java
Selection on Linked Mutations: A forward population genetic simulation for studying linkage effects, such as hitchhiking, background selection, and Hill-Robertson interference.
This Repository contains the benchmark simulations to test our implementation of Pedigree Recording.
Models of Stickleback fish populations in Alaska. Continuous space models simulate a Marine population along a coast and many, much smaller, freshwater populations connected by migration. Plotly website listed to show data
Contains code to simualte spots on background noise, and the convolutional neural network framework to train on those images.
The source files for a spring 2020 BGMP term paper focused on phip-seq analysis pipeline
This is the C# UNITY scripts to our game, Squirrel Suiter.
A library of standard simulation models for msprime
LaTeX Source for Stickleback Paper
test repo for submodule learning
Code For learning on Encodings of msprime's TreeSequence Object.
This repository will hold a notebook which will walk through and explain some tskit `TreeSequence` basics
This repository contains the pre-print pdf of our published paper _Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes_
This repository contains the code that will visualize a treeSequence object from tskit
This repository contains the source code for my latest project where were will be visulaizing genealogical history for use with deep learning.
This is the starting code for endcoding an msprime TreeSequence Object into a 3D array for ML and visualization purposes
contains the source for my undergraduate thesis