Comments (1)
Hi Gerardo,
Thank you for trying ChIPpeakAnno.
The gene downstream is defined as downstream from end of a gene, not downstream of the ORF. It may be the downstream of 3'UTR.
Let me know if you still have any question.
Jianhong.
from chippeakanno.
Related Issues (20)
- Error with `bindingType` in `annotatePeakInBatch` HOT 2
- toGRanges() no longer working in response to UCSC update HOT 3
- Questions on the how genomicElementDistribution works HOT 1
- error in enrichmentPlot() when providing a partially empty GO object HOT 1
- toGRanges() can't read in file name HOT 1
- Differences between bedtools overlap / findOverlaps and findOverlapsOfPeaks HOT 10
- disjointExons removed in Bioconductor 3.17 HOT 1
- How to understand otherExon HOT 7
- `findOverlapsOfPeaks(gr1, gr2)` Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs. HOT 6
- How to set the circle size same proportion of the number of peaks when there are more than 2 sets using `makeVennDiagram`? HOT 5
- oligoSummary not populating the motif matrix output field HOT 2
- makeVennDiagram fails with error 'Unexpected parameter length for "col"' HOT 4
- cvglists rtracklayer import error: Error in stop_if_wrong_length(what, ans_len) 'ranges' must have the length of the object to construct HOT 4
- hello,I don't know how to deal with it,can you help me figure it out. thanks HOT 8
- makeVennDiagram produces undesired console output HOT 6
- Regarding oligoSummary() HOT 1
- opened in error
- anno gene in heatmap HOT 4
- Number of Overlap Peaks HOT 1
- makeVennDiagram HOT 4
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