Comments (4)
What version of the game did you start your save on?
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3.0.0
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Running on downgraded patches will cause the behavior you are experiencing; the Pokedex was initially stored in one save block, but with the first DLC it was reformatted into a second block.
Downgrading from a DLC patch to a pre-DLC patch will cause the game to look at the old Pokedex block, which is never revised due to the new Pokedex block being the active block for DLC save files.
PKHeX does not support this scenario of downgrading patches and reversing the migration of blocks, as there is no reasonable scenario to do so. Play on your console with updated patches.
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I see that somehow the DLC got removed from Scarlet. Reinstalling the DLC seemed to fix the problem. Thanks for the help!
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