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activetransferlearning

Code for various active transfer learning projects.

adtransitions

Estimating transition probabilities in a multi-state model for Alzheimer's Disease (AD)

alcoholic-hepatitis-ml

asd-integration-subtypes-manuscript

awesome-vaes

A curated list of awesome work on VAEs, disentanglement, representation learning, and generative models.

bio-cca

Code accompanying the paper "A biologically plausible neural network for multi-channel Canonical Correlation Analysis"

brca_proteome-data

cancersea

a simple R data package for curated cancer pathway-specific gene lists

cancertypeprediction-1d-cnn

This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".

cca_fusion

Code accompanying our ISBI 2021 paper "Multimodal Fusion using Sparse CCA for Breast Cancer Survival Prediction" https://arxiv.org/abs/2103.05432 by Vaishnavi Subramanian, Tanveer Syeda-Mahmood, Minh N. Do

ccafuse_lets-apply-scrna

Feature fusion using Canonical Correlation Analysis (CCA)

chimera-in-network-of-kuromoto-oscillators_m

This repository contains codes that I wrote while working on my MSc thesis. This work resulted in a research paper which is currently under review in "Frontiers in Physics". I will link the paper once the paper gets published.

chimera_mechanism_interesting-fig

Julia code to explore the dynamics and mechanism of strong chimeras

circadian-clock-analysis--interface

classify_chimeras

Classify chimera states based on correlation measures.

comparative_analysis_multi-omics_biomarker

consensustme

ConsensusTME Gene Sets and R Script

dbpepvar_related-to-server

deep-learning-multiomics

diffusion

Gray-Scott diffusion simulation in 2-dimensions and 3-dimensions

digital-patient

disorder_sync_m

Exploring the effect of random oscillator heterogeneity on network synchronization.

fouroscmodel

This repository contain codes used for the four-oscillator model of interpersonal synchronization.

functional_control_m

Repository of the code used for the paper "Functional Control of Oscillator Networks"

fuzzy-c-means_niceone

Video link: https://www.youtube.com/watch?v=FA-hJBu5Bkc

gcn_multiomics_4new_work

gficf_svd

An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization

gout-script_pcoa-analysis

gradkcca

Implementations of gradKCCA

graphcon_vis_coupled_oscillator

GraphCON (ICML 2022)