Comments (3)
The error is disappeared. I will analyze more samples to check the stability. Thank you!
from mixcr.
Hi,
can you please try the latest develop version and confirm the error is still there.
Also, do your samples come from the same patient? If needed you can pass multiple clns files to the findShmTrees
command to generate trees across multiple samples if they all come from the same biological object.
from mixcr.
Thank you, I will try the latest develop version. They come from different patients. I can upload the .clns file if the error is still exist.
from mixcr.
Related Issues (20)
- The majority of results in 'clones_TR[A|B].tsv' are "region_not_covered" HOT 1
- allVHitsWithScore allDHitsWithScore allJHitsWithScore allCHitsWithScore HOT 1
- FASTQ and BAM give discordant results HOT 6
- Help with TCR-seq alignment rate
- findAlleles get empty clone data HOT 11
- Rhapsody BCR+TCR full length data input HOT 2
- Generating all all_contig_annotations.json to run enclone after MiXCR
- Postanalysis output explanation HOT 3
- `Feature for allele search doesn't intersect JGene` error when running `findAlleles` HOT 1
- Question: Does mixcr take sequence stagger into consideration? HOT 1
- ERROR: picocli.CommandLine$ExecutionException: Error while running command align java.lang.IllegalStateException: Check failed. HOT 6
- Importing new whitelist for parsebio protocols HOT 8
- Long CDR3 sequences HOT 1
- when I used mixcr to analyze RNAseq data, there was an error "unknown options" HOT 1
- Downsampling output missing
- QIAgen Targeted library HOT 1
- overlapScatterPlot output correlation coefficient and p values
- Han el all preset HOT 5
- Pre-Clonotypes HOT 1
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