Comments (1)
@pinin4fjords and Oskar Wacker checked the label assignments with the test data on test profile, everything seemed good.
I have tested with another dataset and also tested with nf-core/differential_abundance v1.4.
They were seeming appropriately assigning the assay names.
I think everything is indeed in order and this was only visual "mishap".
For the above figures when I check the actual png figures they were looking a bit better than the rendered plots of the report.
For this specific dataset, I believe data plots shrunken a little bit more than usual and made us question the correctness of the labels on the report rendering part .
Closing the issue with this comments.
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Related Issues (20)
- Remove parameter --gsea_run HOT 1
- URGENT: pin nf-validation version HOT 2
- Dev version: On parameters website list parameter gene_sets_files in section GSEA HOT 1
- Name of blocking variable not correctly recognized HOT 7
- Continuous covariates HOT 8
- Please pin the version of the nf-validation plugin! HOT 1
- Error with samplesheet.csv with two column headers that have prefix in common HOT 8
- release differentialabundance HOT 1
- Process `NFCORE_DIFFERENTIALABUNDANCE:DIFFERENTIALABUNDANCE:GTF_TO_TABLE (gencode)` terminated with an error exit status (125) HOT 4
- Error in TABULAR_TO_GSEA_CHIP HOT 1
- GSEA html reports have broken links to png and TSV files HOT 1
- Failed to publish file => double forward slashes
- Auto-format sample names HOT 2
- PosixFileAttributeView
- Missing colour and hover labels in interactive report volcano plot HOT 4
- Provide a parameter to disable rmarkdown report creation in the differential abundance pipeline HOT 2
- Requests: Enhancements to DESeq2 csv outputs and PDF outputs
- For spike-in analysis, remove control features from outputs
- How to use `--transcript_length_matrix` with nf-core/rnaseq `--aligner star_rsem` output? HOT 2
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