Comments (1)
Any tool for loop calling that would work with the existing pipeline would be a great addition :) I've heard good things about HiCExplorer, and Mustache from Ay lab (https://github.com/ay-lab/mustache).
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Related Issues (20)
- Include pairtools protocol HOT 3
- Certain sample names produce a missing header error on INPUT_CHECK:SAMPLESHEET_CHECK step HOT 2
- Put FastQ File Splitting in a Dedicated Process HOT 8
- Exit error 140 HOT 2
- COOLTOOLS_INSULATION creates invalid software version on Azure Batch
- sort extreme large pairs files
- Difference in the detection of validpair interactions between various version of hic HOT 2
- samplesheet error HOT 3
- java error HOT 1
- NFCORE_HIC:HIC:CUSTOM_DUMPSOFTWAREVERSIONS (1) terminated with an error exit status (1) HOT 4
- NFCORE_HIC:HIC:FASTQC error: fastqc tmp dir on HPC
- add parameter to tune balancing HOT 1
- add calder2 module
- Improve multiQC report
- [Question] Mad-max filter HOT 1
- Reopening the split-fastq error
- What are the restriction enzymes name used by Arima? HOT 1
- Fatal error related to the format of the input files
- Process `NFCORE_HIC:HIC:COOLER:COOLER_MAKEBINS (null})` terminated with an error exit status (127) HOT 3
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