Name: Pritam Kumar Panda
Type: User
Company: German Cancer Research Center (DKFZ)
Bio: Bioinformatician | Data Scientist
Twitter: pritamkpanda
Location: Heidelberg, Germany
Blog: https://bioinfocopilot.tilda.ws
Pritam Kumar Panda's Projects
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Useful bash one-liners for bioinformatics.
Collection of bioinformatics training materials
Scientific arts for publications, conferences and networking
Reading notes
CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses
This pipeline provides a way to perform pharmaceutical compounds virtual screening using similarity-based analysis, ligand-based and structure-based techniques. The pipeline contains a collections of modules to perform a variety of analysis.
CytoExploreR: A Comprehensive Open-Source R Package for Interactive Cytometry Data Analysis
Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network
Jupyter notebooks containing ML based approach for drug designing and chemoinformatics
How to utilize R programming for predicting quality metrics for Fastq files.
High-throughput FACS analyses with R
Tutorial on git version control with basic and advanced commands
gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
Generating a grid for docking in AutoDock Vina without using GUI tools like MGLTools
Interactive Protein Sequence VIsualization/Viewer - Interactive Circos
Lazy Predict help build a lot of basic models without much code and helps understand which models works better without any parameter tuning
Data visualization library for creating interactive graphs and dashboards for bioinformatics etc.
Boolean Model
Convert Seurat objects to 10x Genomics Loupe files.