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Name: Ryan N. Ptashkin
Type: User
Location: New York, NY
Name: Ryan N. Ptashkin
Type: User
Location: New York, NY
Voyager Backend
:crown: :bee: :bar_chart: Beyoncé colour palettes for R
Python package to calculate various sample contamination metrics.
Copy number variant detection from targeted DNA sequencing
analysis pipeline for CODEC data
Concordance and contamination estimator for tumor-normal pairs
Color palettes that will have covfefe of 45's blunders
Shiny application to calculate risk score from model params
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
Load, review and adjust facets fits
Tools for copy-number analysis using FACETS
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
Script to automatically create and run IGV snapshot batchscripts
Develop a knowledge-based approach using MSK-IMPACT data to build an automatic variant classifier
Molecular International Prognostic Scoring System IPSS-M for Myelodysplastic Syndromes
Iterative error correction of long reads
Computing with Python functions.
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
Structural variant and indel caller for mapped sequencing data
Python package and routines for merging SV VCF files
microsatellite instability detection using tumor only or paired tumor-normal data
Annotates variants in MAF with OncoKB annotation.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.