rsh249 Goto Github PK
Name: Rob Harbert
Type: User
Company: Edge Case Bioinformatics
Bio: Independent Bioinformatics Scientist
Location: Virginia
Name: Rob Harbert
Type: User
Company: Edge Case Bioinformatics
Bio: Independent Bioinformatics Scientist
Location: Virginia
The repository for the Spring 2019 iteration of Applied Bioinformatics. This semester will focus on teaching bioinformatics to undergrads using Nanopore sequencing to drive course projects.
Repository for BIO332 SP2020. Contains GitHub pages configuration, course notes, webpage tutorials, code, reading lists, and blog posts.
Exploration, clustering, visualization and classification of DNA damage patterns
Notes and code for Bioinformatics 2021
Geospatial lessons for BIO3331 -- Notes and R scripts
An Introductory Undergraduate course in Bioinformatics
Open Educational Resources for BIO303 Environmental Botany
CRACLE analysis of Jurassic fossils
Finally an R package dedicated to the CRACLE method for estimating climate from biological proxies.
Code demonstration pages
A pipeline for building and maintaining a local SQL mirror of the Global Biodiversity Information Facility database in SQL. A local, optimized SQL database can increase data access speeds by several orders of magnitude.
Experimental geographic manipulation functions adapted to GPU processing with CUDA.
A generalized version of an undergraduate introductory course in Bioinformatics
A methods testing pipeline for classification of short-read plant metagenomic data from environmental or ancient DNA
Exploratory analyses using Alpha Vantage financial API
Experimental pipeline for ancient DNA damage pattern detection in metagenomic samples.
Packrat ancient DNA metagenomics pipeline and tools
R code and results files to create figures published in Harbert and Nixon, 2018 (Open Quaternary)
Python bulk landsat dowloads -- Adapted from geologyandpython.com tutorials
SICG Workshop -- Introduction to Python Programming for Bioinformatics
An R script for calculating the Thornthwaite Potential Evapotranspiration on global temperature raster layers
Towards a framework for parallel computing with raster and other geospatial data objects in R.
public-page
Testing data preprocessing and automation for SDMs using ENMeval and Maxent
RGGS short course in spatial bioinformatics
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.