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Name: Alec Steep
Type: User
Company: University of Michigan
Bio: Working on that quantitative skillset. MoTrPAC (https://motrpac.org/)
Location: Ann Arbor, MI
Name: Alec Steep
Type: User
Company: University of Michigan
Bio: Working on that quantitative skillset. MoTrPAC (https://motrpac.org/)
Location: Ann Arbor, MI
A fastq to bam workflow
A base R Image on Ubuntu
A MuSiC2 workflow in CWL and Dockerized images
A quick R script to parse data in GTF format
Example code from bulk RNASeq analysis
Bird's-eye Genos
Examination of MoTrPAC RNA-Seq
PASS1A MoTrPAC Metabolomics
Processing of UMich metabolomics PASS1A data prior to drift correction
SNP Alleles in Selective Sweep Regions
Validation of nonsynonymous snv and indel calls in Gallus gallus Marek's disease lymphomas
A simple strategy for winning internal funding at Umich
Preprocessing and mapping whole genome sequencing illumina reads from Bermuda chickens
This pipeline aims to call hard-filtered germline snps from Bermuda chickens.
Extension of filtering of somatic non-synonymous SNVs and INDELs (custom filtering strategy using samtools mpileup) followed by custom functional annotation of each variant and the gene they are mutated in.
Documentation for extraction of relevant annotation to MDV project from publicly available databases
Docker image for MuSiC2
Bioinformatic analysis for IKZF1 paper
Scripts used in MDV project
Identification of Marekโs disease virus genes associated with virulence of US strains
A Somatic Mutation Enrichment Pipeline
Analysis of validated variants and their predicted effect on gene product (specifically, protein) function
Random Forest Model to Predict "Real" Indels
Explanation of tumor sampling, storage, and testing
An Example Submission to the SRA
Supplementary information
Umich Salary Data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.