Tex LH Chi's Projects
for deep learning project (TMUH clinical trial)
forensic medicine
for TMM and TMWH scholarships
CV vitae
Curated list of TCGA resources
Utility to facilitate the building and installation of EFI secure boot kernels under Gentoo Linux.
The Cancer bioMarker Prediction Pipeline (CAMPP)
Updated version 2 of Cox-nnet
Pathway-based sparse deep neural network for survival analysis
Jupyter notebooks for the code samples of the book "Deep Learning with Python"
A collaboratively written review paper on deep learning, genomics, and precision medicine
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
DeepHit: A Deep Learning Approach to Survival Analysis with Competing Risks
Code for the Paper "Automatic Feature Selection for Survival Analysis with Deep Learning"
Deep Survival Machines - Fully Parametric Survival Regression
Implementation of DeepSurv using Keras
Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.
Deep Recurrent Survival Analysis, an auto-regressive deep model for time-to-event data analysis with censorship handling. An implementation of our AAAI 2019 paper and a benchmark for several (Python) implemented survival analysis methods.
A web interface to extract tabular data from PDFs
The fastai deep learning library
An R client for broads firehose pipeline, providing TCGA data sets
FirebuildeR is generating the source code for FirebrowseR