Comments (3)
How do you check whether you have downloaded something before?
from pubmed_parser.
Yeah, I have the checking if folder exists in update
function. However, now I save file in the name format like medline_DD_MM_YY.parquet
. I would like to improve the workflow where it saves log file so we can track the file.
Also, now the download and process are in the same pipeline (after running the code, it will download and process at once). I would like the ability to call function separately also.
from pubmed_parser.
This should be done in Wiki page on the repository.
from pubmed_parser.
Related Issues (20)
- Question: Abstract with Mesh Tag HOT 3
- question using pp.parese_medline HOT 2
- Question: parsing error first line expecting '<' not found
- parse_pubmed_caption() failing on some papers
- ValueError when attempting to parse OA XML HOT 3
- Bug report - XML citations from website HOT 1
- CALL FOR MAINTAINER/CONTRIBUTOR FOR PUBMED_PARSER HOT 7
- Parse language in `parse_xml_web()` HOT 1
- Update tests: Use current data HOT 2
- Fix Medline parser tests HOT 1
- Parse VersionID and VersionDate
- Inconsistent PMID and DOI when using parse_xml_web for an XML file. HOT 1
- Handling of non-ASCII / unicode characters
- Fix GitHub workflows HOT 4
- Drop all_paragraph from parse_pubmed_paragraph() HOT 7
- It couldn't recognize the xml file I downloaded from pubmed HOT 6
- How to extract the figures' inline mentions from the artcile xml file? HOT 2
- AttributeError: 'NoneType' object has no attribute 'text' when using parse_pubmed_caption
- AttributeError: 'NoneType' object has no attribute 'getchildren' HOT 1
- [Bug report] No module find error HOT 3
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from pubmed_parser.