Topic: molecular-evolution Goto Github
Some thing interesting about molecular-evolution
Some thing interesting about molecular-evolution
molecular-evolution,An R package to identify and classify duplicated genes from whole-genome protein sequence data
User: almeidasilvaf
Home Page: https://almeidasilvaf.github.io/doubletrouble/
molecular-evolution,Program for estimating dN/dS in overlapping genes (OLGs)
Organization: chasewnelson
molecular-evolution,Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Organization: chasewnelson
molecular-evolution,Program for simulating non-reversible DNA sequence evolution on a fixed bifurcating tree using trinucleotide context
Organization: chasewnelson
molecular-evolution,A codeml (PAML package) wrapper to make life easier. Dummy input unaligned multi-species fasta file (a single gene), and output codeml result.
User: chenyangkang
molecular-evolution,Comparative Genomics Toolkit 3
Organization: cogent3
Home Page: https://cogent3.org
molecular-evolution,Phylotranscriptomic analysis pipeline
Organization: csb-seongmincheon
molecular-evolution,A comparative annotation toolkit (CAT) pipeline for 304 fly genomes.
User: dhakadpankaj
molecular-evolution,A Maxima package to work with evolutionary dynamics and related topics.
User: emmanuelroque
molecular-evolution,phylogenetics tools for linux (and other mostly posix compliant) computers
Organization: fephyfofum
Home Page: blackrim.org
molecular-evolution,Python version of PHLAWD
Organization: fephyfofum
molecular-evolution,Pronunced /'baze/ - is a tool which allows to integrate non-ubiquitous genes in comparative genomics analyses for selection.
User: for-giobbe
molecular-evolution,Homepage of Dr Stephen P. Moss, Computational Scientist
User: gawbul
Home Page: https://gawbul.github.io
molecular-evolution,Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.
User: j3551ca
molecular-evolution,Molecular Evolution Library for Python
User: jalvarezjarreta
molecular-evolution,MBEToolbox: Matlab toolbox for molecular evolution
User: jamesjcai
Home Page: https://www.ncbi.nlm.nih.gov/pubmed/15780146
molecular-evolution,Computational Biology & Bioinformatics Resources
User: jananiravi
molecular-evolution,
User: jananiravi
Home Page: https://jravilab.github.io/publication
molecular-evolution,phylogenetic analyses informed by deep mutational scanning data
Organization: jbloomlab
molecular-evolution,DFOIL: Introgression Testing for Five Taxa
User: jbpease
Home Page: https://peaselab.github.io
molecular-evolution,Multisample Variant Format ToolKit
User: jbpease
molecular-evolution,Simulate predictive datasets from MrBayes' output
User: jmenglund
molecular-evolution,Data and analysis for the DciA evolution manuscript | StallingsLab & JRaviLab
Organization: jravilab
molecular-evolution,Companion repository to the Internalin P Listeria manuscript | HardyLab & JRaviLab
Organization: jravilab
molecular-evolution,Janani Ravi's Research Group
Organization: jravilab
Home Page: https://jravilab.github.io
molecular-evolution,An R Package for characterizing proteins using molecular evolution and phylogeny
Organization: jravilab
Home Page: https://jravilab.github.io/MolEvolvR/
molecular-evolution,
Organization: jravilab
molecular-evolution,Workflow for identifying and classifying homologous gene/protein sequences
User: laelbarlow
molecular-evolution,A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
User: lkremer
molecular-evolution,Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
User: lkremer
molecular-evolution,A tool for multiscale forward-time simulation of protein evolution.
User: louisgt
molecular-evolution,A Python library which allows construction and manipulation of complex molecules, as well as automatic molecular design and the creation of molecular databases.
User: lukasturcani
Home Page: https://stk.readthedocs.io/
molecular-evolution,A tool for plotting CAFE5 gene family expansion/contraction result
User: moshi4
molecular-evolution,Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
User: moshi4
molecular-evolution,Microbial Genome Circular plotting tool for comparative genomics using Circos
User: moshi4
molecular-evolution,
Organization: peaselab
molecular-evolution,
User: philsf
molecular-evolution,SpeciesTopoTestR: Likelihood-based hypothesis tests of species topologies in R
User: radamsrha
molecular-evolution,R script for GenBank sequences names changing, filling-in missing molecular markers data and sequences concatenation
User: rainbowmycelium
molecular-evolution,Haplotype RecOnstruction using Longitudinal sequencing Data
Organization: richardagoldstein
Home Page: https://doi.org/10.1101/444877
molecular-evolution,A new model-selection criteria for phylogenetics to calculate the predictive log-likelihood score.
User: sennettm
molecular-evolution,Calculate conditional probability distributions of extant sequences given a phylogenetic tree, sequence alignment, and evolutionary model.
User: sennettm
molecular-evolution,A solutions manual for all excercises in the Ziheng Yang's two seminall books on statistical molecular evolution: Computational Molecular Evolution (Yang 2006) and Molecular Evolution: A Statistical Approach (Yang 2014).
User: sishuowang
molecular-evolution,Target-enrichment data processing in legumes
Organization: smithsonian
molecular-evolution,*Cerna-Vargas J-P., *Gumerov V.M., Krell T., Zhulin I.B. (2023) Amine recognizing domain in diverse receptors from bacteria and archaea evolved from the universal amino acid sensor. PNAS, 120, e2305837120
User: toshkadev
Home Page: https://www.pnas.org/doi/epdf/10.1073/pnas.2305837120
molecular-evolution,V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.
User: toshkadev
Home Page: https://www.pnas.org/doi/10.1073/pnas.2110415119
molecular-evolution,*Monteagudo-Cascales E., *Gumerov V.M., Fernández M., Matilla M.A., Gavira J.A., Zhulin I.B., Krell T. (2024) Ubiquitous purine sensor modulates diverse signal transduction pathways in bacteria.
User: toshkadev
Home Page: https://www.biorxiv.org/content/10.1101/2023.10.26.564149v1
molecular-evolution,R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
User: v-z
Home Page: https://trapa.cz/en/course-molecular-data-r-2022
molecular-evolution,project that enables molecular design and computational screening of small molecules
User: wesleybeckner
molecular-evolution,A curated list of awesome Molecular Modeling And Drug Discovery 🔥
User: wudangt
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