translationalbioinformaticsunit Goto Github PK

a-primer-on-transformers-in-single-cell-genomics

bcell

Gene Regulatory Network of early B cell differentiation in Humans

bmn_characterization

clustall

clustall_ad

ClustALL: A robust clustering strategy for stratification of patients with acutely decompensated cirrhosis.

dockerseminar

excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

fanconi

genesetcluster

a tool for summarizing and integrating gene-set analysis results

genesetcluster2.0

GeneSetCluster 2.0: a comprehensive toolset for summarizing and integrating gene-sets analysis

genomebrowser

gse198256_erxercise

ictus-rankin-pred

Data analysis of ICTUS data for prediction of RANKIN scores

jesteg.github.io

libra

Machine Translation between paired Single Cell Multi Omics Data

llm_assistant_mini-review

methylation-recipes

Scripts related to 450k and EPIC data analysis

moses

Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models

multiple_mm

pygreat

Python wrapper for GREAT (http://great.stanford.edu)

rnaseq-pair-end-pipeline

Description of the different step in Pipeline RNAseq Pair End. From fastq to count tables. Then normalize and obtain the genes highly differentiated.

rnaseq-pipeline

Description of the different step in Pipeline RNAseq Single End. From fastq to count tables.

rnaseqbulksnake

bulk RNA-seq processing pipeline using DESeq2, edgeR, Voom, implemented with snakemake

sc-rna-seq-pipeline

sc_multiom

scbert-reusability

Reusability report of scBERT

scdiff

simulateddata

singlecelldb

An actionable database of publicly available single-cell RNA-seq data

singlecelldb-sample-app

Sample Django app for SingleCell DB project