Daniele Capocefalo's Projects
A curated list of awesome Bioinformatics libraries and software.
A curated list of reproducible research case studies, projects, tutorials, and media
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
An integrative annotator of human Copy Number Variants using functional genomic features
Slides and introductiory material for getting started with Git!
Single-cell multi-omics integration using Optimal Transport
a Python/based tool for the construction of MultiLayered Networks from publicly available data
A high performance python package for network analysis based on non canonical metrics
create sankey diagrams with matplotlib
Scanpy use cases.
jupyther notebook comparing reproducibility of single-cell network inference algorithms
compbio notes and unix shell commands
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
Tissue of Origin Predictor of Onco-Samples
Plots Meaningful Representations of Complex Networks