Comments (1)
Empty output is generated when input annotations are not in GFF3 format or 1st column of the GFF file does not match chromsome, scaffold, or contig ids in the source assembly. flo now informs user of the same if liftOver's output is empty.
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Related Issues (20)
- faToTwoBit: cannot execute binary file HOT 5
- gt gff3 error HOT 7
- liftover gtf file HOT 1
- Present as a set of scripts
- gt gff3: error: Parent ... was not defined (via "ID=") HOT 6
- mitochondrial genes HOT 3
- flo compilation error HOT 1
- Workflow manager? HOT 1
- Flo failed at the GenomTools section HOT 3
- flo failed on Large genome HOT 9
- file "-" does not contain 9 tab (\t) separated fields HOT 7
- Syntax issue with rake HOT 2
- Error when blat begins HOT 5
- gff_recover error HOT 4
- undefined method `last' for nil:NilClass (NoMethodError)
- Expecting number line ERROR HOT 2
- cc command not found HOT 1
- GFF format issue with CoGe input
- install.sh fails with a make error for libgenometoools.so HOT 2
- Issue a release & publish on Bioconda? HOT 1
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from flo.