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Name: Youssef Abili
Type: User
Bio: 5000genomi@vda | Bioinformatics | Data Scientist | Entrepreneur Attitude
Location: Italy
Name: Youssef Abili
Type: User
Bio: 5000genomi@vda | Bioinformatics | Data Scientist | Entrepreneur Attitude
Location: Italy
adapters_trim
Script to parse annotated vcf files (VEP,snpEff,ANNOVAR) to a csv table
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
tools for adding mutations to existing .bam files, used for testing mutation callers
Usefull bash script and tricks to play with sequences
Cancer Genome Interpreter annotates the biological and clinical relevance of tumor alterations
CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer.
code to simply build a singularity image from a conda environment.
Collection of GEO datasets of RNAseq. Main focused on analysis of GSE163426.
DiVA.wgs (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Whole Genome data analysis
Short Course to get Bioinformaticians at CRUK-CI up-to-speed on Docker
Docker container for running AnnotSV
Perform GATK hard-filtering of germline SNVs and indels
Joint calling of gVCF, following GATK4 Best Practices
Nextflow implementation of Mutect2 Panel Of Normals subworkflow (GATK Best Practices)
Merge variants generated with Mutect2 and Strelka
R tools for Bioinformatics
RNAseqFastq2Counts
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Variant Calling Pipeline Using GATK4 and Nextflow
Converts Variant Effect Predictor (VEP) VCF output to tab-delimited file.
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.