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bi303

Repository for BI303 R exercises

boston_trees

Shiny app for tree-planting in Boston

cohesion_networks

Scripts for calculating microbial sample cohesion using association networks

dietzelab

Dietze Ecological Forecasting Lab Webpage

ee509

Applied Environmental Statistics course: Boston University, Earth & Environment 509

exercise4rkq

ge585_exercise4

metabolic_model_curation

Curate genome-scale metabolic models using MEMOTE, cobrapy, and cometspy.

metagem

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

metagenomes_neon

microbialforecasts

Code for creating and validating forecasts of microbial abundances at NEON sites.

nefi_microbe

nefi_project-drift

Data, code, and analyses for a Near-term Ecological Forecasting course project on invertebrate drift change at Lees Ferry.

neon_explore

Our joint repository for the NEON workshop (Nov. 8-9, 2018)

neonsoilmicrobes

R package for downloading and processing soil microbial data from the National Ecological Observatory Network.

neonstore

A local content-based storage system for NEON data

sbx_binning

sunbeam extension for metagenome-assembled genomes (MAGs)

sbx_coassembly

Sunbeam extension to co-assemble metagenomic reads using Megahit

sbx_metaquast

A Sunbeam extension to evaluate metagenome assembly using metaQUAST

sbx_template

Template for Sunbeam extensions.

soap

GE585 Spring 2019: "Soil Organism chAnging Predictably" fungal functional group forecast

soc-drahr

Soil organic carbon data recovery and harmonization (SOC-DRaHR)

soil_bacteria_functional_groups

soil_genome_db

soil_microbe_gems

Compilation of published genome-scale metabolic models (GEMs) for constraint-based modeling of the soil microbiome

soil_n_metabolic

Simulating N fluxes in soils using genome-scale metabolic models

zoey-rw.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes