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hhj's Projects

ctk icon ctk

CLIP Tool Kit (CTK)

dapars2 icon dapars2

Dynamics analysis of Alternative PolyAdenylation from RNA-seq

fastp icon fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

leafcutter icon leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

mixcr icon mixcr

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

salmon icon salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

tophat icon tophat

Spliced read mapper for RNA-Seq

vdjviz icon vdjviz

A lightweight immune repertoire browser

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