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alitreeviz

anadama2

AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your workflow and execute it efficiently on your local machine or in a grid compute environment (ie. sun grid engine or slurm).

ant-design

An enterprise-class UI design language and React UI library

ant-design-web3

🥳 [Still in Progress] A components collection for Web3!

app-search-node

Elastic App Search Official Node.js Client

assemblyscript

A TypeScript-like language for WebAssembly.

barm_web_server

Baltic sea Reference Metagenome web server

basalt

bbdown

Bilibili Downloader. 一款命令行式哔哩哔哩下载器.

bhl-us

Source code for the Biodiversity Heritage Library's web site and supporting processes.

bilibiliapidocs

哔哩哔哩开放接口第三方文档（仅提供官方曾公开接口）

biobakery

bioBakery tools for meta'omic profiling

biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

biomod2

BIOMOD is a computer platform for ensemble forecasting of species distributions, enabling the treatment of a range of methodological uncertainties in models and the examination of species-environment relationships.

bioone

blobology

Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)

blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

bookstack

BookStack，基于MinDoc，使用Beego开发的在线文档管理系统，功能类似Gitbook和看云。

bowtie2

A fast and sensitive gapped read aligner

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

camisim

CAMISIM: Simulating metagenomes and microbial communities

cat

CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

cazy-parser

A way to extract specific information from CAZy

cazy_webscraper

Web scraper to retrieve protein data catalogued by the CAZy, UniProt, GenBank and PDB websites/databases.

cdhit

Automatically exported from code.google.com/p/cdhit

checkm

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

cloud-on-k8s

Elastic Cloud on Kubernetes

coldp

coverm

Read coverage calculator for metagenomics

craco

Create React App Configuration Override, an easy and comprehensible configuration layer for create-react-app