Comments (1)
You don't have to worry about them; just proceed to Class2D. If the barcode is narrow, such particles can be used. If it is too wide, they will go to bad classes. Same for fringes.
If you really care about barcodes, remove particles too close to the micrograph edges by filtering by rlnCoordinateX and Y. This can be done with awk, or Subset selection jobs. Also note that the AutoPick job has an option:
--skip_side (0) : Keep this many extra pixels (apart from particle_size/2) away from the edge of the micrograph
from relion.
Related Issues (20)
- Proxy error during build HOT 1
- Refine auto 3D error: Helical reconstruction HOT 1
- Segmentation Fault relion_refine_mpi HOT 5
- Denoise Tomograms with continue Flag HOT 1
- Align tilt-series additional arguments HOT 4
- Import Problem: no such option: -optics-group-name
- Relion 5 fails to reconstruct tomograms by asking for _rlnTomoMicrographNameEven label HOT 10
- BUG in RELION 5: Denoise fails with an assert command HOT 4
- Feature request: Color jobs in the GUI HOT 1
- Improve method finding CUDA libraries HOT 2
- corrupted size vs. prev_size
- Error in running blush regularisation in 3D classification HOT 1
- cannot import data with symbolic links HOT 1
- Import successfull but resulting star file contains only single movie for all tiit angles HOT 3
- Relion tomo segmentation fault in Refine3D
- Relion5 Ctf estimation: BUG: MDin should contain a rlnMicrographPreExposure label HOT 4
- AreTomo alignment and tomogram reconstruction faulty HOT 2
- RELION tomogram reconstruction fails (or produces weird contrast) when carbon is in images HOT 1
- In 3D classification, iteration 1 densities are scaled by normcorrection
- Relion Job struck at - Relion MPI Setup - for multinode jobs HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from relion.