Name: Andrea Mariani
Type: User
Company: European School of Molecular Medicine
Bio: Currently PhD student in Systems Biology @ European School of Molecular Medicine (SEMM), working on Epigenetics, Genomics and Transcriptomics
Twitter: Andrea1Mariani
Location: Milan, Italy
Blog: https://www.linkedin.com/in/andrea-mariani-584138175/
Andrea Mariani's Projects
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
ChIPseq pipeline for Pasini's lab written in snakemake
Collection of some functions for combinatorial indexing experiments
CutNtag pipeline for Pasini's lab written in snakemake
This repo contains different architectures for Denoising ChIPseq experiments
This repo contains github actions to build various Docker Images
Analysis of Chromosome Conformation Capture data (Hi-C)
Kind PyTorch Tutorial for beginners
This repo contains links and a tutorial on how to set up a new machine with all the tools i need + customizations
Formalizing and benchmarking open problems in single-cell genomics
Collection of notes of my PhD done with Obsidian
RNAseq pipeline for Pasini's lab written in snakemake
Package repo
This repo contains a shorter version of an RNAseq pipeline. It'll be used to test HPC resources
Some functions to evaluate Unsupervised Clustering for Single Cell RNAseq