Paul Donovan's Projects
Small tsRNA pipeline
A pipeline for the identification of fungi in public metagenomics datasets
FindFungi scripts for single server version
Config files for my GitHub profile.
A collection of useful python tools
Automatically render all reaper projects from terminal
Scripts used to analyse riboswitches
Handy scripts for RNA-seq
A Python2 script for generating simulated RNA-seq data with realistic read coverage profiles
Test the accuracy of STAR mapping reads simulated using Simulence
TargetScan output to full GO analysis
Nextflow DSL2 small RNA-seq tsRNA analysis pipeline
Nextflow DSL2 tRNA and ncRNA fragment identification pipeline for small RNA-seq data
Generate all annotation files necessary to add a new species to tsRNAsearch
Example output from a tsRNAsearch analysis
Bash Script to Setup VBox MacOS Guest
Integrating zingeR with ZINB-WaVE weights