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arnie

Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.

biotools

A list of useful bioinformatics resources

cbioportal-queries

Query the cBioportal datasets through the cgdsr package in order to return mutation frequencies, CNA frequencies and z-score alteration frequencies for the queried studies

cellchat_shinyapps

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

copehnagen-biohackathon

Torch scripts

courses

fast.ai Courses

dalamagas_stuff

Solutions for the exercises in the Algorithms in Bioinformatics course of the Data Science and Information Technology M.Sc. (Biomedical Data Science Specialization)

desctools

Tools for Descriptive Statistics and Exploratory Data Analysis

distmap

DistMap

fesetup

A tool for setting up free energy simulations.

gene-expression-and-mutation-associations

Still needs quite a lot to be worked on

harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

image_processing_ex1

itbi_ex6_ad

Solutions for exercise 6 of Introduction to Bioinformatics for the DSIT M.Sc.

itbi_final_project

mdpr-full

A repository that hosts the necessary scripts to install and run the MDPR routine created by iGEM Athens 2019.

mlcb-project

mudan

Multi-sample Unified Discriminant ANalysis

neuralturingmachine

Tensorflow implementation of a Neural Turing Machine

ninjapcr

Open Thermocycler Implementation

pokebattle-rl-env

An OpenAI Gym environment for Pokemon battles

pokemon-showdown

Pokémon battle simulator.

random-dedos-stuff

Please do not look, this is shite.

raspberry-codes

rstudio

RStudio is an integrated development environment (IDE) for R

scrinvex

Single Cell RNA Intron-Exon counting

sickle

Windowed Adaptive Trimming for fastq files using quality

some-kind-of-coronavirus-assignment

Well, this is still in it's infancy.

thyroid-cancer-a-bioinformatics-approach

This repository contains everything that was used for the construction of the thesis for my B.Sc. named Elucidating the role of microRNAs in thyroid cancer oncogenesis