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Name: Ilya Flyamer
Type: User
Company: FMI
Bio: Molecular and computational biologist 3D genomics
Twitter: phlya
Location: Basel, Switzerland
Name: Ilya Flyamer
Type: User
Company: FMI
Bio: Molecular and computational biologist 3D genomics
Twitter: phlya
Location: Basel, Switzerland
A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.
Conda recipes for the bioconda channel.
Official git repository for Biopython (converted from CVS)
[wip] mapping integration sites of defined sequences using Hi-C-like data
Code and examples for C-TALE normalization
Jupyter notebook based genomic data visualization toolkit.
A cool place to store your Hi-C
Code and data used to replicate the analysis in the coolpup.py paper
The tools for your .cool's
snakemake workflow to analyze Hi-C-like data for multiple versions of the reference genome
[DEPRECATED} A pipeline fastq->heatmaps for an SGE cluster based on hiclib
Blazing fast toolkit to work with .hic and .cool files
Fast large scale matrix visualization for the web.
Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
using hmm on bigwigs
Some scripts for image analysis
A liftOver wrapper to accomodate BEDPE files
Finishing distiller processing of Bonev's data manually to avoid re-doing filtering
matplotlib: plotting with Python
A conda-smithy repository for multiprocessing-logging.
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
tools for BEDPE-style peaks
python module to plot beautiful and highly customizable genome browser tracks
Package for fetching metadata and downloading data from SRA/ENA
Image Processing SciKit (Toolbox for SciPy)
Statistical data visualization using matplotlib
SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.
Simple snakemake profile for qsub cluster
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.