abl-lab Goto Github PK

abl-lab.github.io

ambiguous-dataset

Conditional generation (w/ CVAE) of class-ambiguous images. Contains full ambiguous datasets for MNIST digits and EMNIST letters.

assemblyfire

detection and analysis of cell assemblies in the Blue Brain Project

blenderneuron

Exports 3D structure and activity from NEURON simulator to Blender

bluecellulab

Simulation and experimentations on neuron cells

bluepymm

Blue Brain Python Cell Model Management

bluepyopt

Blue Brain Python Optimisation Library

brayns

Visualizer for large-scale and interactive ray-tracing of neurons

brion

Blue Brain C++ File IO Library

connectomeutilities

Connectome Utilities

coreneuron

Simulator optimized for large scale neural network simulations.

diameter-synthesis

Diameter synthesis

efel

Electrophys Feature Extraction Library

libsonata

A python and C++ interface to the SONATA format

libsonatareport

long-range-micro-connectome

BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome

luigi

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

micronsbinder

A collection of notebooks to provide examples of using Microns-explorer.org datasets

morph-tool

morphio

A python and C++ library for reading and writing neuronal morphologies

morphoclass

Neuronal morphology preparation and classification using Machine Learning.

morphology-documentation

Morphology Specifications used at BBP

morphology-workflows

Workflows used for morphology processing.

nbgrader

A system for assigning and grading notebooks

netpyne

A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.

neurodamus

Neurodamus

neurom

Neuronal Morphology Analysis Tool

neuromorphovis

A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

neuror

A collection of tools to repair morphologies

neurots

Topological Neuron Synthesis