Comments (1)
This issue is resolved. It is NOT an issue with SPAdes. Rather, this behaviour was caused by the filesystem being full and therefore SPAdes was unable to write to a file.
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Related Issues (20)
- Incompatible licenses HOT 1
- Error == system call for: config.info HOT 4
- Spades finished abnormally HOT 1
- SPAdes: Running since 4 days HOT 4
- Resuming Hybrid Assembly fails HOT 2
- OS return value: -9 HOT 5
- == Error == system call for: spades-core, finished abnormally, OS return value: -9 HOT 1
- Linux build does not run in a directory containing spaces
- Input requirement for hybrid assembly HOT 6
- error while parsing GFA path record HOT 7
- ERROR HOT 5
- Error-6 can not open tmp folder HOT 1
- core dump when runing pathracer HOT 2
- Error code 2. unlink(2) failed HOT 1
- == Error == system call for: finished abnormally, OS return value: 21 (Pair of read files contain unequal amount of reads) HOT 8
- sequence name is empty HOT 3
- Minority mutations used for final assembly (metaspades, hybrid ONT-SR) HOT 1
- spades-core: /spades/assembler/src/common/assembly_graph/core/debruijn_data.hpp:38: void debruijn_graph::CoverageData::inc_coverage(int): Assertion `value >= 0 || coverage_ > unsigned(-value)' failed. HOT 1
- spades 4.0.0 mmap(2) failed. Reason: Cannot allocate memory. Error code: 12 HOT 5
- Files with merged reads were ignored HOT 6
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