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acq4

Main repository for ACQ4 development

analysis-tools

Code for analyzing data saved by the Open Ephys GUI

ara_tools

Analysis of mouse brain STP data with respect to the Allen Reference Atlas

bg-gitbook

Mirror of the brainglobe GitBook page

bonsai-rx-docs

unofficial documentation for bonsai-rx

bonvision

BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of Behavioural Neuroscience in collaboration with NeuroGEARS.

brainreg

Automated 3D brain registration with support for multiple species and atlases.

brainregister

Python package for elastix-based registration of tissues to atlases; with mouse brain registration to the Allen CCFv3 built-in.

cellfinder

Automated 3D cell detection and registration of whole-brain images

cellfinder-core

Standalone cellfinder cell detection algorithm

cellfinder-documentation

Documentation for the cellfinder project

documentation

Documentation source for ACQ4

examples

Example workflows for the BonVision closed-loop visual environment generator

gui

Software for electrophysiology data acquisition

ibllib

IBL core shared libraries

kilosort

GPU code for spike sorting

klusta

Automatic spike sorting up to 64 channels

lasagna

3-D imaging visualisation through slicing

masiv

Matlab Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data

my_first_repo

Try to use git and run a python script

neuro

Visualisation and analysis of brain imaging data

onix-docs

Documentation for ONIX, the next-generation Open Ephys Acquisition System

phy

Spike sorting, analysis, and visualization of ephys data in Python

phy-contrib

Plugins for phy

pinceau

Model for the ephaptic inhibition paper

plugin-gui

Open Ephys GUI with plugin architecture

programming_python3

read-roi

Read ROI files .zip or .roi generated with ImageJ.

simpleclust

Manual spike clustering software for matlab

spikes

cortex lab code for electrophysiology