abrar-alshaer Goto Github PK

afodor.github.io

biolockj

calorimetryanalysis

Calorimetry Data Analysis Program for the TSE Platform - Animal Metabolism Phenotyping Core Shaikh Lab University of North Carolina Chapel Hill

dexseq

Fork of DEXSeq, this is not the official DEXseq. For that go here: http://bioconductor.org/packages/release/bioc/html/DEXSeq.html

do_mice_high_fat

Data & code used for paper titled: Diversity Outbred Mice Model the Heterogeneity of Obesity and Identify Novel SNPs and Gene Networks Associated with Weight Gain

git-demo2016-spring

gittest

hw-acceptance-unit-test-cycle

agile development berkeleyX 169.1 HW5

hw-ruby-intro

Ruby Introduction Assignment for Agile Development using Ruby on Rails

lipidomics-analysis

A simple statistical loop analyzing differences between 3 dietary groups' lipid mediators

luminexanalysis

Analyzing results from a BioRad bioplex/luminex assay kit

metabolomicsanalysis

This repository shows an example metabolomics full analysis protocol (given validated metabolomics data). The example is using our lab's adipose tissue metabolomic data (from Nichole Reisdorph Lab). This was applied to the data for the manuscript by Pal et al. 2019 in the Shaikh Lab.

metagenomicstools

Tools for metagenomics analysis

neural-networks-and-deep-learning

Code samples for my book "Neural Networks and Deep Learning"

nhanes

This repository includes the code to mine the NHANES database for nutritional intake of DHA/EPA with respect to specific anthropometric parameters.

pcr_analysis

qiime2_16s-analysis

This repository includes all the code and a manual for how to analyze QIIME2 data from a 16S experiment, along with code that was used for QIIME1.9 as well.

r_snippets

R Scripts for general data analysis and plotting

randomproteingenerator

rna-seq

This repository contains all the code used for the research paper titled: Exon Level Machine Learning Analyses Elucidate Novel Candidate miRNA Targets in an Avian Model of Fetal Alcohol Spectrum Disorder. Al-Shaer AE et al (2019) PLoS Comput Biol

rottenpotatoes-rails-intro

RottenPotatoes app skeleton for saasbook/hw-rails-intro

ruby-calisthenics

Skeleton code and specs for the Ruby Calisthenics Assignment

script-editor

Script Editor and Interpreter for SciJava script languages

seahorse_analysis

This repository includes the code & manual to analyze the results from the Seahorse Mitochondrial Stress Test Assay

simulatebariatricsurgery

A power analysis simulation for detecting immune cellular marker differences in a CyTOF dataset from a bariatric surgery clinical trial.

simulateclinicaltrial

A power analysis simulation for correlating antibody levels with numerous SNPs in a DHA supplementation clinical trial.

simulatemetabolites

A power analysis simulation for testing numerous metabolites in a pre/post intervention model of omega 3 supplements.

subread_to_dexseq

A way to use FeatureCounts output for DEXSeq

testing-demo

testing-demonew