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10x.results.to.velocity.loom

Wrapper script for a GenePattern module to create a velocity compatible loom file from single cell bam files

27gn950controller

Control bias lighting on the LG 27GN950 monitor

affystexpressionfilecreator

Creates a GCT file from a set of CEL files from Affymetrix ST arrays.

anndata

Annotated data.

cellrank.fatemap

CellRank wrapper module for GenePattern

conos

R package for the joint analysis of multiple single-cell RNA-seq datasets

conos.cluster

Clustering using Conos (part 2/3)

conos.preprocess

Read, preprocess, and project data using Conos (step 1/3)

constellationmap

A downstream visualization and analysis tool for gene set enrichment results with interactive web visualizer

convert.10xbam.to.fastq

10x bamtofastq wrapper module for GenePattern

convert.alevin

Convert alevin wrapper module for GenePattern.

deseq2

A Differential Expression workflow for RNA-Seq data based on the DESeq2 package from Bioconductor

deseq2.normalize

Wrapper for DESeq2 based normalization-only module.

ensembl-tools

Ensembl tools

fancy.action.bar.eso

genepattern-python

GenePattern Python Library

geoimporter

Imports data from the Gene Expression Omnibus (GEO)

gsea2

GenePattern Module Wrapper for Next Gen GSEA

gsea_r

Updated implementation of the GSEA-P R application for modern R distributions

gsea_r_old

Revisions to the GSEA-P R Application (Subramanian and Tamayo et al 2005)

join.files

Simple file joiner for GenePattern.

julia

The Julia Programming Language

killcounter-eso-addon

https://www.esoui.com/downloads/info1690-KillCounter-5.0.5ElsweyrNecromancerIncluded.html

llm_testing_data

luiextended

Lui Extended addon for ESO

msigdbr

MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

pagoda2

R package for analyzing and interactively exploring large single-cell RNA-seq datasets

preprocessvelocitytranscriptome

Transcriptome preprocessing for RNA Velocity wrapper module for GenePattern.

provisionsteamformation

TeamFormation is a user Interface for The Elder Scrolls Online, designed to show the positions and health of your teammates, like a radar.

provisionsteamformation_patchdev

ProvisionsTeamFormation with my personal adjustments