Example error about dabest-python HOT 8 CLOSED

Hi,

which version of pandas are you using?

Thanks,
Joses

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Requirement already up-to-date: pandas in /usr/local/lib64/python3.7/site-packages (0.25.1)
Requirement already satisfied, skipping upgrade: numpy>=1.13.3 in /usr/local/lib64/python3.7/site-packages (from pandas) (1.17.1)
Requirement already satisfied, skipping upgrade: pytz>=2017.2 in /usr/local/lib/python3.7/site-packages (from pandas) (2019.2)
Requirement already satisfied, skipping upgrade: python-dateutil>=2.6.1 in /usr/lib/python3.7/site-packages (from pandas) (2.8.0)
Requirement already satisfied, skipping upgrade: six>=1.5 in /usr/lib/python3.7/site-packages (from python-dateutil>=2.6.1->pandas) (1.12.0)

Best regards,
Heiko

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Hi,

As seen in #52 and #60 (my bad, I shouldn't have closed these unresolved issues), dabest doesn't play properly with pandas=0.25. For now, I would advise using pandas='0.24.

Thanks,
Joses

PS the easiest way to get any package's version is to run

pandas.__version__

in a Jupyter cell.

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I get the same error, and probably for the same reason. Any hint on how to fix the issue with pandas >= 0.25?

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@lrq3000 It should be fixed in pandas v0.26.0.dev0, which you can install from source. Why not just downgrade (pip install "pandas<0.25" --force-reinstall) or use a venv for now though?

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Yes thank you, apparently it's going to be fixed with 0.25.2 minor revision but no ETA, so I'll downgrade meanwhile.

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@BioinfoTongLI I think you should do what @mje-nz suggests: set up a conda env or venv, and either install pandas==0.26.0.dev0 from source, or downgrade to pandas=0.24. Hope this solves your problem!

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Closed with #89

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