adamjorr Goto Github PK

2016-05-23-biodesignasu

2018-05-03-lbnl

Data Carpentry Genomics workshop at Lawrence Berkeley National Laboratory on 3-4 May 2018

adamjorr.github.io

Github Pages Page

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

arch-packages

My PKGBUILDs for some packages

biometry-lab

Labs for biometry class

business-cards

comps

Comprehensive exam

cv

My CV and resume

cvc

Consensus Variant Caller

denovogear

A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)

dissertation

eminem

mixtures of negative multinomials (mnm) for modeling sequencing data

errlumina

Software analyzing error patterns in Illumina reads

factdraft

Software for fast drafting of fact-based writing

gatk

Official code repository for GATK versions 4 and up

grants

Repository for grant applications

grfp

My submission for the 2017 NSF GRFP

gtts-cog

A Red cog for Google Text To Speach

hap.py

Haplotype VCF comparison tools

jelly

jellyfish

A fast multi-threaded k-mer counter

jupyterlab

JupyterLab computational environment.

kbbq

reference-free base quality score recalibration

kbbq-paper

A paper describing Base Quality Score Recalibration with kbbq

kbbq-py

k-mer based base quality recalibration

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

lighter

Fast and memory-efficient sequencing error corrector

meep

Maximization of Expected Evolutionary Parameters

mengtzu.github.io